{"version":1,"metadata":{"name":"Allen 2020 named regional parcellations","version":"1.0.0","source":"https://download.alleninstitute.org/informatics-archive/allen_human_reference_atlas_3d_2020/version_1/","volumeUrl":"https://download.alleninstitute.org/informatics-archive/allen_human_reference_atlas_3d_2020/version_1/annotation_full.nii.gz","ontologyUrl":"https://download.alleninstitute.org/informatics-archive/allen_human_reference_atlas_3d_2020/version_1/examples/voxel_count/voxel_count.csv","license":"CC BY 4.0","licenseUrl":"https://creativecommons.org/licenses/by/4.0/","licenseEvidence":"https://download.alleninstitute.org/informatics-archive/allen_human_reference_atlas_3d_2020/version_1/README.pdf","credit":"© 2019 Allen Institute for Brain Science. Ding, S.-L. et al. (2020), RRID:SCR_017764.","citation":"Song-Lin Ding, Joshua J. Royall, Susan M. Sunkin, Benjamin A.C. Facer, Phil Lesnar, Amy Bernard, Lydia Ng, Ed S. Lein (2020). Allen Human Reference Atlas – 3D, 2020, version 1.0.0.","coordinates":{"units":"mm","x":"right","y":"superior","z":"anterior","centerSourceRAS":[0.0,-16.0,5.5],"sourceAffine":[[0.5,0.0,0.0,-98.0],[0.0,0.5,0.0,-134.0],[0.0,0.0,0.5,-72.0],[0.0,0.0,0.0,1.0]],"sourceAxisCodes":["R","A","S"]},"derivation":"Individually annotated labels only, native 0.5 mm grid; split at anatomical RAS x=0; marching cubes after 0.55-voxel Gaussian smoothing. Disconnected components with surface area below 0.3% of the largest component are removed. Topology-preserving decimation retains original marching-cube vertices, targeting 1200 triangles for cerebral-cortex/cerebellum regions and 700 for other regions; topology preservation may retain more triangles. Coordinates rounded to 0.001 mm. Same world coordinates as atlas.json. No synthetic gross shapes, inferred subfields or graph-node substitutes.","limitations":"The source delineates gross reference regions on averaged MRI, not individual histology. Source supraoptic REGION is not the supraoptic nucleus. Hippocampal head/body/tail are longitudinal regions, not CA or dentate subfields. Cerebellar deep nuclei are a grouped label, not separately measured dentate/interposed/fastigial nuclei. Regional views omit unannotated or unsupplied regions; colors do not define cellular borders. Source tract volumes are parcellations, not reconstructed axons.","sha256":{"annotation_full.nii.gz":"2b05581e39c44f2623d9b0a69f64e3df0823c20d054abef92973812313335dc3","voxel_count.csv":"7348be087e6c2b6cb1fde1d604761cdd2d70e0e33ded6e1f322db334959d162f"},"sourceShape":[394,466,378],"sourceSpacingMm":[0.5,0.5,0.5],"totalSourceLabeledVoxels":13963410},"meshes":[{"id":"hippocampal-head-left","regionId":"hippocampal-head","name":"Head of hippocampus · left","kind":"atlas-region","hemisphere":"left","topicIds":["hippocampus"],"atlasStructureIds":[12171],"sourceLabelName":"head of 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